Hallelujah: Approximate Vertex Cover Solver

All things pass; God does not change (Saint Teresa of Avila).

This work builds upon The Hallelujah Algorithm.

The Minimum Vertex Cover Problem

The Minimum Vertex Cover (MVC) problem is a classic optimization problem in computer science and graph theory. It involves finding the smallest set of vertices in a graph that covers all edges, meaning at least one endpoint of every edge is included in the set.

Formal Definition

Given an undirected graph $G = (V, E)$, a vertex cover is a subset $V' \subseteq V$ such that for every edge $(u, v) \in E$, at least one of $u$ or $v$ belongs to $V'$. The MVC problem seeks the vertex cover with the smallest cardinality.

Importance and Applications

Related Problems

Problem Statement

Input: A Boolean Adjacency Matrix $M$.

Answer: Find a Minimum Vertex Cover.

Example Instance: 5 x 5 matrix

c1 c2 c3 c4 c5
r1 0 0 1 0 1
r2 0 0 0 1 0
r3 1 0 0 0 1
r4 0 1 0 0 0
r5 1 0 1 0 0

The input for undirected graph is typically provided in DIMACS format. In this way, the previous adjacency matrix is represented in a text file using the following string representation: 

p edge 5 4
e 1 3
e 1 5
e 2 4
e 3 5

This represents a 5x5 matrix in DIMACS format such that each edge $(v,w)$ appears exactly once in the input file and is not repeated as $(w,v)$. In this format, every edge appears in the form of 

e W V

where the fields W and V specify the endpoints of the edge while the lower-case character e signifies that this is an edge descriptor line.

Example Solution:

Vertex Cover Found 1, 2, 3: Nodes 1, 2, and 3 constitute an optimal solution.

Compile and Environment

Prerequisites

Installation

pip install hallelujah

Execution

  1. Clone the repository:

    git clone https://github.com/frankvegadelgado/hallelujah.git
cd hallelujah

  2. Run the script:

    pray -i ./benchmarks/testMatrix1

    utilizing the pray command provided by Hallelujah's Library to execute the Boolean adjacency matrix hallelujah\benchmarks\testMatrix1. The file testMatrix1 represents the example described herein. We also support .xz, .lzma, .bz2, and .bzip2 compressed text files.

    Example Output:

    testMatrix1: Vertex Cover Found 1, 2, 3

    This indicates nodes 1, 2, 3 form a vertex cover.

Vertex Cover Size

Use the -c flag to count the nodes in the vertex cover:

pray -i ./benchmarks/testMatrix2 -c

Output:

testMatrix2: Vertex Cover Size 6

Command Options

Display help and options:

pray -h

Output:

usage: pray [-h] -i INPUTFILE [-a] [-b] [-c] [-v] [-l] [--version]

Compute the Approximate Vertex Cover for undirected graph encoded in DIMACS format.

options:
  -h, --help            show this help message and exit
  -i INPUTFILE, --inputFile INPUTFILE
                        input file path
  -a, --approximation   enable comparison with a polynomial-time approximation approach within a factor of at most 2
  -b, --bruteForce      enable comparison with the exponential-time brute-force approach
  -c, --count           calculate the size of the vertex cover
  -v, --verbose         anable verbose output
  -l, --log             enable file logging
  --version             show program's version number and exit

Batch Execution

Batch execution allows you to solve multiple graphs within a directory consecutively.

To view available command-line options for the batch_pray command, use the following in your terminal or command prompt: 

batch_pray -h

This will display the following help information:

usage: batch_pray [-h] -i INPUTDIRECTORY [-a] [-b] [-c] [-v] [-l] [--version]

Compute the Approximate Vertex Cover for all undirected graphs encoded in DIMACS format and stored in a directory.

options:
  -h, --help            show this help message and exit
  -i INPUTDIRECTORY, --inputDirectory INPUTDIRECTORY
                        Input directory path
  -a, --approximation   enable comparison with a polynomial-time approximation approach within a factor of at most 2
  -b, --bruteForce      enable comparison with the exponential-time brute-force approach
  -c, --count           calculate the size of the vertex cover
  -v, --verbose         anable verbose output
  -l, --log             enable file logging
  --version             show program's version number and exit

Testing Application

A command-line utility named test_pray is provided for evaluating the Algorithm using randomly generated, large sparse matrices. It supports the following options: 

usage: test_pray [-h] -d DIMENSION [-n NUM_TESTS] [-s SPARSITY] [-a] [-b] [-c] [-w] [-v] [-l] [--version]

The Hallelujah Testing Application using randomly generated, large sparse matrices.

options:
  -h, --help            show this help message and exit
  -d DIMENSION, --dimension DIMENSION
                        an integer specifying the dimensions of the square matrices
  -n NUM_TESTS, --num_tests NUM_TESTS
                        an integer specifying the number of tests to run
  -s SPARSITY, --sparsity SPARSITY
                        sparsity of the matrices (0.0 for dense, close to 1.0 for very sparse)
  -a, --approximation   enable comparison with a polynomial-time approximation approach within a factor of at most 2
  -b, --bruteForce      enable comparison with the exponential-time brute-force approach
  -c, --count           calculate the size of the vertex cover
  -w, --write           write the generated random matrix to a file in the current directory
  -v, --verbose         anable verbose output
  -l, --log             enable file logging
  --version             show program's version number and exit

Code

Complexity

+ This algorithm finds near-optimal solutions for the hard Minimum Vertex Cover problem in polynomial time, with an approximation ratio below 2. This breakthrough challenges the computational boundaries and disproves the Unique Games Conjecture.

License